NELFA (negative elongation factor complex member A)

symbol:
NELFA
locus group:
protein-coding gene
location:
4p16.3
gene_family:
alias symbol:
NELF-A
alias name:
None
entrez id:
7469
ensembl gene id:
ENSG00000185049
ucsc gene id:
uc003gem.4
refseq accession:
NM_005663
hgnc_id:
HGNC:12768
approved reserved:
1998-07-24
4p16.3
基因染色体位置图

NELFA(Negative Elongation Factor A,负延伸因子A)是NELF(Negative Elongation Factor,负延伸因子)复合体的核心成员之一,属于NELF基因家族。该家族包括NELFA、NELFB、NELFCD和NELFE四个亚基,共同形成NELF复合体,主要功能是通过与RNA聚合酶II(Pol II)结合,暂停其转录延伸过程,从而调控基因表达。NELFA作为支架蛋白,维持复合体稳定性,并与其他亚基协同作用。NELF复合体在转录暂停(transcription pausing)中起关键作用,这是一种广泛存在的基因调控机制,允许细胞快速响应外界信号或内部需求,通过释放暂停的Pol II来激活基因表达。NELFA的生物学功能涉及胚胎发育、细胞分化、免疫应答等过程。其表达产物为含有RNA识别基序(RRM)的蛋白质,可直接与新生RNA结合。主要作用位点是基因启动子近端区域,通过暂停Pol II调控下游基因(如原癌基因、热休克蛋白基因等)的表达水平。突变或异常表达可能导致NELF功能紊乱。例如,NELFA缺失会破坏复合体组装,导致转录暂停缺陷,引发Pol II过度延伸,造成基因表达失调。研究发现,NELFA与癌症(如乳腺癌、白血病)、神经发育障碍(如自闭症谱系障碍)相关,其突变可能通过影响细胞增殖或分化通路致病。过表达NELFA可能增强转录暂停,抑制生长相关基因,导致细胞周期阻滞;而低表达则可能解除暂停机制,促使原癌基因过度激活,增加肿瘤风险。NELF家族共性在于均参与转录延伸负调控,依赖多亚基协作,且与DSIF(DRB Sensitivity-Inducing Factor)复合体共同作用。其他成员如NELFE也具备RNA结合能力,但NELFA是复合体组装的核心。专业术语解释:RNA聚合酶II(Pol II)是负责转录蛋白质编码基因的酶;转录暂停指Pol II在启动子近端暂时停滞的现象;支架蛋白指维持蛋白质复合体结构的分子。若需进一步探讨NELFA在特定疾病中的机制或其他家族成员功能,可补充说明。

This gene is expressed ubiquitously with higher levels in fetal than in adult tissues. It encodes a protein sharing 93% sequence identity with the mouse protein. Wolf-Hirschhorn syndrome (WHS) is a malformation syndrome associated with a hemizygous deletion of the distal short arm of chromosome 4. This gene is mapped to the 165 kb WHS critical region, and may play a role in the phenotype of the WHS or Pitt-Rogers-Danks syndrome. The encoded protein is found to be capable of reacting with HLA-A2-restricted and tumor-specific cytotoxic T lymphocytes, suggesting a target for use in specific immunotherapy for a large number of cancer patients. This protein has also been shown to be a member of the NELF (negative elongation factor) protein complex that participates in the regulation of RNA polymerase II transcription elongation. [provided by RefSeq, Jul 2008]

此基因与在胎水平高于成人组织中普遍表达。它编码与小鼠蛋白的蛋白质共享93%的序列同一性。狼希尔施霍恩综合征(WHS)是与染色体4。该基因被映射到165 kb的WHS关键区域的远端短臂的半合子缺失相关的畸形综合症,和在WHS或皮特的表型中起一定作用-Rogers - 丹克斯综合征。所编码的蛋白质被发现以能够与HLA-A2限制性和肿瘤特异性细胞毒性T淋巴细胞反应,这表明对在特异性免疫治疗用途为大量的癌症患者的目标的。这种蛋白也被证明是在RNA聚合酶II转录延伸的调节参与所述NELF(负延伸因子)蛋白质复合物的成员。 [由RefSeq的,2008年7月提供]

NELFA基因的碱基序列:[NCBI]
Loading Gene Browser...
NELFA基因的碱基突变:           仅显示部分snp
rs385845       rs405638       rs446119       rs458849       rs570712       rs1010917       rs1894425       rs2754203       rs7376890       rs7377932       rs7654492       rs7661072       rs7669847       rs7669867       rs10006421       rs10016224       rs55947652      

NELFA基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
TCCCAGGTAAGATGAAGGG
58
AAGGACTTCAAGATGTCGG
57
GATCTTCCCATCTCAGCCT
59
GCCCTTCATCTGTAATCCC
58
TCGACAACATCCGTCTCTG
60
AATAGGATGCTCGTCCACC
59
AATAAGTGGATGAAGGGCG
58
AAAGGACTTCAAGATGTCGG
58
ACTTCATGTGGTTCTTACCG
58
AAGTACTGGCACTCCAGTG
59
CGGAGAAGGAAGACTCTCG
59
TCAGGGACCCAAGTTTCTG
59
ATCTTCCCATCTCAGCCTC
59
ACACTCACCCACTGTAATCC
60
GATCTTCCCATCTCAGCCT
59
GGCAAGACTCTGTAATCCC
58
CTAAGGGCTTCACCTGGAG
60
CTGAAGACCATTCACAGGC
59
CAATAAGTGGATGAAGGGCG
59
AGGACTTCAAGATGTCGGC
60
      尚未收录相关数据

NELFA基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

NELFA基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0003682
A0A0C4DFX9 (UniProtKB)
IEA
GO:0003682
A0A0C4DFX9 (UniProtKB)
IEA
GO:0032021
A0A0C4DFX9 (UniProtKB)
IEA
GO:0034244
A0A0C4DFX9 (UniProtKB)
IEA
GO:0045944
A0A0C4DFX9 (UniProtKB)
IEA
GO:0051571
A0A0C4DFX9 (UniProtKB)
IEA
GO:0005654
C9JEM7 (UniProtKB)
IDA
GO:0005737
C9JEM7 (UniProtKB)
IDA
GO:0032021
C9JEM7 (UniProtKB)
IEA
GO:0034244
C9JEM7 (UniProtKB)
IEA
GO:0005654
C9JHL4 (UniProtKB)
IDA
GO:0005737
C9JHL4 (UniProtKB)
IDA
GO:0032021
C9JHL4 (UniProtKB)
IEA
GO:0034244
C9JHL4 (UniProtKB)
IEA
GO:0032021
F8W954 (UniProtKB)
IEA
GO:0034244
F8W954 (UniProtKB)
IEA
GO:0032021
F8WF98 (UniProtKB)
IEA
GO:0034244
F8WF98 (UniProtKB)
IEA
GO:0005654
H0Y3X6 (UniProtKB)
IDA
GO:0005737
H0Y3X6 (UniProtKB)
IDA
GO:0032021
H0Y3X6 (UniProtKB)
IEA
GO:0034244
H0Y3X6 (UniProtKB)
IEA
GO:0032021
H7C0W2 (UniProtKB)
IEA
GO:0034244
H7C0W2 (UniProtKB)
IEA
GO:0032021
H7C2C7 (UniProtKB)
IEA
GO:0034244
H7C2C7 (UniProtKB)
IEA
GO:0032021
H7C2M8 (UniProtKB)
IEA
GO:0034244
H7C2M8 (UniProtKB)
IEA
GO:0032021
H7C3C2 (UniProtKB)
IEA
GO:0034244
H7C3C2 (UniProtKB)
IEA
GO:0005515
Q9H3P2 (UniProtKB)
IPI
GO:0005515
Q9H3P2 (UniProtKB)
IPI
GO:0005515
Q9H3P2 (UniProtKB)
IPI
GO:0005515
Q9H3P2 (UniProtKB)
IPI
GO:0005654
Q9H3P2 (UniProtKB)
IDA
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005654
Q9H3P2 (UniProtKB)
TAS
GO:0005737
Q9H3P2 (UniProtKB)
IDA
GO:0006366
Q9H3P2 (UniProtKB)
TAS
GO:0006368
Q9H3P2 (UniProtKB)
TAS
GO:0006368
Q9H3P2 (UniProtKB)
TAS
GO:0006368
Q9H3P2 (UniProtKB)
TAS
GO:0007275
Q9H3P2 (UniProtKB)
TAS
GO:0032021
Q9H3P2 (UniProtKB)
IDA
GO:0034244
Q9H3P2 (UniProtKB)
IEA
GO:0050434
Q9H3P2 (UniProtKB)
TAS

可能调控 NELFA基因的相关microRNA:     

Reactome

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Wolf-Hirschhorn Syndrome 0.120814326 3 0 BeFree_ORPHANET
Tobacco Use Disorder 0.002367032 1 0 GAD
Trisomy 0.000542884 2 0 BeFree

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