CIITA (class II major histocompatibility complex transactivator)

symbol:
CIITA
locus group:
protein-coding gene
location:
16p13.13
gene_family:
NLR family
alias symbol:
C2TA|NLRA
alias name:
NLR family, acid domain containing…
entrez id:
4261
ensembl gene id:
ENSG00000179583
ucsc gene id:
uc002dai.5
refseq accession:
NM_000246
hgnc_id:
HGNC:7067
approved reserved:
1997-06-12
16p13.13
基因染色体位置图

CIITA(Class II Major Histocompatibility Complex Transactivator)是MHC II类反式激活蛋白,属于NLRC(NOD-like receptor family CARD domain-containing)基因家族成员。该基因位于人类16号染色体上,编码一个含有多个功能域的转录调控因子,主要功能是调控MHC II类分子(如HLA-DR、HLA-DQ、HLA-DP等)的表达。CIITA通过招募组蛋白乙酰转移酶等染色质修饰复合物到MHC II类基因启动子区域,激活这些基因的转录。其表达受多种细胞因子(如IFN-γ)调控,主要在抗原呈递细胞(如B细胞、树突状细胞、巨噬细胞)中活跃。CIITA突变会导致一种罕见的免疫缺陷病——裸淋巴细胞综合征II型(Bare lymphocyte syndrome type II),患者表现为MHC II类分子表达缺失,引发严重的联合免疫缺陷,易发生反复感染。该基因过表达可能引发自身免疫疾病(如类风湿关节炎、系统性红斑狼疮),因其会异常激活MHC II类分子呈递自身抗原;而表达降低则导致免疫应答缺陷,增加感染风险。CIITA还能调控CD74(MHC II类分子伴侣蛋白)及其他免疫相关基因(如B细胞活化因子)。NLRC家族共性在于均含有CARD(caspase recruitment domain)结构域,参与先天免疫信号转导和炎症反应调控。研究发现CIITA多态性与多种自身免疫疾病易感性相关,其表达水平可作为某些癌症免疫治疗的生物标志物。

This gene encodes a protein with an acidic transcriptional activation domain, 4 LRRs (leucine-rich repeats) and a GTP binding domain. The protein is located in the nucleus and acts as a positive regulator of class II major histocompatibility complex gene transcription, and is referred to as the "master control factor" for the expression of these genes. The protein also binds GTP and uses GTP binding to facilitate its own transport into the nucleus. Once in the nucleus it does not bind DNA but rather uses an intrinsic acetyltransferase (AT) activity to act in a coactivator-like fashion. Mutations in this gene have been associated with bare lymphocyte syndrome type II (also known as hereditary MHC class II deficiency or HLA class II-deficient combined immunodeficiency), increased susceptibility to rheumatoid arthritis, multiple sclerosis, and possibly myocardial infarction. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2013]

该基??因编码有酸性转录激活结构域的蛋白质,4个LRR(富亮氨酸重复序列)和一GTP结合结构域。该蛋白位于细胞核内,并作为第二类主要组织相容性复合基因转录的正调节,并作为“主控制因子”对这些基因的表达被提及。该蛋白质也结合GTP和使用GTP结合,以促进其自身的运输到核中。一旦在细胞核中它不结合的DNA,而是使用了一个本征乙酰转移酶(AT)活性的共活化剂状方式行事。在这种基因突变与裸淋巴细胞综合症II型(也称为二遗传类MHC缺乏或HLA类II缺陷型的联合免疫缺陷),易感性增加类风湿关节炎,多发性硬化症,以及可能心肌梗塞相关联。已发现该基因编码不同亚型的几个抄本变形。 [由RefSeq的,2013年11月提供]

CIITA基因的碱基序列:[NCBI]
Loading Gene Browser...
CIITA基因的碱基突变:           仅显示部分snp
rs4774       rs1139564       rs1139565       rs2071170       rs2228238       rs2228239       rs2229317       rs2229318       rs2229319       rs2229320       rs2229321       rs2229322       rs3087456       rs3087519       rs3205043       rs3211302       rs3922481      

CIITA基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
AAACCCTCAAACAAGGGCT
59
GAGATTCCTTGAGGCCAGG
59
TCTGGACAGGCATGTTCTC
59
ATACAGCCTGGAGAAGAGC
58
AGAGCCAAGTCACAAGGAG
59
GTTGATCAGCAACTGCTCTG
59
TTCCACTCATTTAATCCCTCTC
57
ACCTAGGCTATAGTGCAGTG
58
TGAGCTCTACTCAGAACCC
58
TCATCACCTTCCATGTCAC
57
TGGACAGGCATGTTCTCTG
59
ATACAGCCTGGAGAAGAGC
58
CAGAGCCAAGTCACAAGGA
59
TTGATCAGCAACTGCTCTG
58
TTCCACTCATTTAATCCCTCTC
57
CCTAGGCTATAGTGCAGTGG
59
TTGAGCTCTACTCAGAACCC
58
CATCACCTTCCATGTCACAC
59
GAAACCCTCAAACAAGGGC
59
GATTCCTTGAGGCCAGGAG
59
转录因子
影响基因
影响类型
参考文献链接(PubMed)
CIITA
COL1A1
Repression
CIITA
COL1A2
Repression
CIITA
COL1A2
Unknown
CIITA
CREBBP
Unknown
CIITA
FASLG
Unknown
CIITA
HLA-A
Activation
CIITA
HLA-B
Activation
CIITA
HLA-C
Activation
CIITA
HLA-DMA
Activation
CIITA
HLA-DMA
Unknown

CIITA基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

CIITA基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0005524
A0A087X0L5 (UniProtKB)
IEA
GO:0006355
A0A087X0L5 (UniProtKB)
IEA
GO:0000122
A0A087X2I7 (UniProtKB)
IEA
GO:0005524
A0A087X2I7 (UniProtKB)
IEA
GO:0006954
A0A087X2I7 (UniProtKB)
IEA
GO:0007568
A0A087X2I7 (UniProtKB)
IEA
GO:0009986
A0A087X2I7 (UniProtKB)
IEA
GO:0045348
A0A087X2I7 (UniProtKB)
IEA
GO:0045944
A0A087X2I7 (UniProtKB)
IEA
GO:0071257
A0A087X2I7 (UniProtKB)
IEA
GO:0071346
A0A087X2I7 (UniProtKB)
IEA
GO:0071360
A0A087X2I7 (UniProtKB)
IEA
GO:0005524
A0A0B4J1S1 (UniProtKB)
IEA
GO:0006355
A0A0B4J1S1 (UniProtKB)
IEA
GO:0005524
I3L2E5 (UniProtKB)
IEA
GO:0006355
I3L2E5 (UniProtKB)
IEA
GO:0005524
I3L2P7 (UniProtKB)
IEA
GO:0006355
I3L2P7 (UniProtKB)
IEA
GO:0000122
P33076 (UniProtKB)
IMP
GO:0003713
P33076 (UniProtKB)
TAS
GO:0005515
P33076 (UniProtKB)
IPI
GO:0005515
P33076 (UniProtKB)
IPI
GO:0005515
P33076 (UniProtKB)
IPI
GO:0005515
P33076 (UniProtKB)
IPI
GO:0005515
P33076 (UniProtKB)
IPI
GO:0005524
P33076 (UniProtKB)
IEA
GO:0005525
P33076 (UniProtKB)
IEA
GO:0005654
P33076 (UniProtKB)
TAS
GO:0006351
P33076 (UniProtKB)
IEA
GO:0006955
P33076 (UniProtKB)
TAS
GO:0008022
P33076 (UniProtKB)
IPI
GO:0016301
P33076 (UniProtKB)
IEA
GO:0016310
P33076 (UniProtKB)
IEA
GO:0016605
P33076 (UniProtKB)
IDA
GO:0016746
P33076 (UniProtKB)
IEA
GO:0032403
P33076 (UniProtKB)
IDA
GO:0032966
P33076 (UniProtKB)
IC
GO:0033613
P33076 (UniProtKB)
IPI
GO:0034341
P33076 (UniProtKB)
IDA
GO:0044212
P33076 (UniProtKB)
IDA
GO:0045345
P33076 (UniProtKB)
IDA
GO:0045348
P33076 (UniProtKB)
IC
GO:0045892
P33076 (UniProtKB)
IDA
GO:0045893
P33076 (UniProtKB)
IDA
GO:0045944
P33076 (UniProtKB)
IDA
GO:0045944
P33076 (UniProtKB)
IMP
GO:0046677
P33076 (UniProtKB)
IDA
GO:0060333
P33076 (UniProtKB)
TAS
GO:0003677
P33076 (UniProtKB)
TAS
GO:0005524
Q29704 (UniProtKB)
IEA
GO:0006355
Q29704 (UniProtKB)
IEA

可能调控 CIITA基因的相关microRNA:     

Reactome

BioGrid

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Bare lymphocyte syndrome 2 0.440814326 5 0 BeFree_CTD_human_MGD_ORPHANET_UNIPROT
Rheumatoid Arthritis 0.252539865 11 3 BeFree_CLINVAR_CTD_human_GAD_LHGDN
Multiple Sclerosis 0.135635346 17 2 BeFree_CTD_human_GAD
Addison Disease 0.125005506 2 0 BeFree_CTD_human_GAD
Bare Lymphocyte Syndrome, Type II, Complementation Group A 0.12 0 2 CLINVAR
Experimental Autoimmune Encephalomyelitis 0.08 1 0 RGD
Periapical Periodontitis 0.08 1 0 RGD
Hepatitis B, Chronic 0.005362824 2 0 BeFree_GAD_LHGDN
Autoimmune Diseases 0.005081451 11 1 BeFree_GAD
melanoma 0.003810118 5 0 BeFree_LHGDN

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