CAPN9 (calpain 9)

symbol:
CAPN9
locus group:
protein-coding gene
location:
1q42.2
gene_family:
EF-hand domain containing
alias symbol:
nCL-4|GC36
alias name:
novel calpain large subunit-4
entrez id:
10753
ensembl gene id:
ENSG00000135773
ucsc gene id:
uc001htz.2
refseq accession:
NM_006615
hgnc_id:
HGNC:1486
approved reserved:
1998-09-25
1q42.2
基因染色体位置图

CAPN9(Calpain 9)属于钙依赖性半胱氨酸蛋白酶家族(Calpain家族),该家族成员通过依赖钙离子调控蛋白水解活性,参与细胞迁移、凋亡、信号转导等过程。CAPN9主要在胃肠道(尤其是胃黏膜)中高表达,其表达产物是一种钙依赖性蛋白酶,通过切割特定底物蛋白调控细胞功能,例如维持胃黏膜屏障完整性及参与消化相关蛋白的代谢。CAPN9的突变可能导致其酶活性丧失,与胃癌发生风险相关,研究发现其表达下调可能削弱胃黏膜保护机制,促进肿瘤发展。若CAPN9过表达,可能异常激活下游信号通路(如NF-κB),加剧炎症反应;而低表达则可能减少对损伤修复关键蛋白的加工,影响组织再生。Calpain家族的共性包括:依赖钙离子激活、具有保守的蛋白酶结构域(CysPc域),并通过限制性蛋白水解(limited proteolysis)调控靶蛋白功能。目前CAPN9的中文译名“钙蛋白酶9”存在争议,部分文献保留英文原名。

Calpains are ubiquitous, well-conserved family of calcium-dependent, cysteine proteases. The calpain proteins are heterodimers consisting of an invariant small subunit and variable large subunits. The large subunit possesses a cysteine protease domain, and both subunits possess calcium-binding domains. Calpains have been implicated in neurodegenerative processes, as their activation can be triggered by calcium influx and oxidative stress. The protein encoded by this gene is expressed predominantly in stomach and small intestine and may have specialized functions in the digestive tract. This gene is thought to be associated with gastric cancer. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

钙蛋白酶是普遍存在的,非常保守的家庭钙依赖性,半胱氨酸蛋白酶。钙蛋白酶蛋白质是由一个不变小亚基和可变的大亚基的异源二聚体。大亚单位具有半胱氨酸蛋白酶结构域,和两种亚基具有钙结合结构域。钙蛋白酶有牵连神经变性过程,因为它们的激活可通过钙离子内流和氧化应激触发。由该基因编码的蛋白在胃和小肠中表达,并且可以具有在消化道专门功能。该基因被认为是与胃癌相关联。已发现该基因编码不同亚型多重选择性剪接转录变异体。 [由RefSeq的,2008年7月提供]

CAPN9基因的碱基序列:[NCBI]
Loading Gene Browser...
CAPN9基因的碱基突变:           仅显示部分snp
rs868143       rs872504       rs872505       rs1316408       rs1316409       rs1316410       rs1316445       rs1316446       rs1548280       rs1887208       rs1887209       rs1890349       rs1890350       rs1890353       rs1890354       rs1933630       rs1933631      

CAPN9基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
GAAAGCTGCAGGCTTTCAG
60
AGTCATCGAAGTCCAGCTG
60
CATTTCCAGTTCTGGCAGC
60
CTCCAGAACTCGTTGTGGT
60
GAGAATCGAGCTCATCCGA
59
TTAAATGCCATCCTGTCGC
59
CTCAGGTATGCGGATGAGG
60
CAAATGGATGAAGGCTCGC
60
ATCGAGCTCATCCGAATCC
59
TAAATGCCATCCAGAATTCCC
59
GCTGAAGCAGTGGATTAACC
59
TGCAGTCCGTAGTTCATAGG
59
AGAGAATCGAGCTCATCCG
59
TAAATGCCATCCTGTCGCT
60
CATTTCCAGTTCTGGCAGC
60
TCCAGAACTCGTTGTGGTC
60
ATCGAGCTCATCCGAATCC
59
AAATGCCATCCAGAATTCCC
59
CAGGTATGCGGATGAGGAG
60
GTCAAATGGATGAAGGCTCG
59
      尚未收录相关数据

CAPN9基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

CAPN9基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0004198
E7ESS6 (UniProtKB)
IEA
GO:0005509
E7ESS6 (UniProtKB)
IEA
GO:0005622
E7ESS6 (UniProtKB)
IEA
GO:0006508
E7ESS6 (UniProtKB)
IEA
GO:0007586
E7ESS6 (UniProtKB)
IEA
GO:0004198
O14815 (UniProtKB)
IEA
GO:0005509
O14815 (UniProtKB)
IEA
GO:0005575
O14815 (UniProtKB)
ND
GO:0005737
O14815 (UniProtKB)
IBA
GO:0006508
O14815 (UniProtKB)
IEA
GO:0007586
O14815 (UniProtKB)
IEA

可能调控 CAPN9基因的相关microRNA:     

BioGrid

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Chronic Lymphocytic Leukemia 0.002367032 1 0 GAD
Tobacco Use Disorder 0.002367032 1 0 GAD
Stomach Carcinoma 0.000542884 2 0 BeFree
Malignant neoplasm of stomach 0.000542884 2 0 BeFree
Malignant neoplasm of endometrium 0.000271442 1 1 BeFree
Endometrial Carcinoma 0.000271442 1 1 BeFree
Uterine Corpus Cancer 0.000271442 1 1 BeFree

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